STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2115Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464. (401 aa)    
Predicted Functional Partners:
MCA1689
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.715
MCA1084
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.661
MCA1946
Putative lipoprotein.
  
     0.642
MCA0945
Conserved hypothetical protein; Identified by similarity to SP:Q49116.
  
     0.622
mltB
Membrane-bound lytic transglycosylase B; Identified by similarity to SP:P41052; match to protein family HMM TIGR02282.
 
   
 0.618
MCA2876
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.586
MCA1768
Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.
  
     0.578
MCA0060
Putative general secretion pathway protein B; Identified by similarity to OMNI:VC2444.
  
     0.559
MCA1825
Conserved hypothetical protein; Identified by similarity to GP:17131822.
  
     0.514
MCA1289
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.481
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.