Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA2116Leucine rich repeat domain protein; Identified by match to protein family HMM PF01816. (255 aa)    
Predicted Functional Partners:
MCA2117
Rhodanese-like domain/ankyrin repeat domain protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
 
     0.815
MCA0214
Conserved hypothetical protein; Identified by similarity to GP:551688.
 
     0.788
MCA0257
Conserved hypothetical protein; Identified by similarity to GP:17131609.
  
     0.757
MCA0218
Conserved hypothetical protein; Identified by similarity to GP:7407093.
 
    0.753
MCA0236
Conserved hypothetical protein; Identified by similarity to GP:12620458; match to protein family HMM PF03270.
 
    0.738
MCA0239
Putative nitrogen fixation protein nifQ; Identified by similarity to SP:P11068; match to protein family HMM PF04891.
  
    0.738
MCA0207
Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.736
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
  
    0.728
MCA0232
Ferredoxin, 2Fe-2S; Identified by similarity to SP:P37097; match to protein family HMM PF00111.
  
     0.723
MCA0262
ATPase, AAA family; Identified by match to protein family HMM PF00004.
  
     0.685
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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