Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2122ABC transporter, ATP-binding protein; Identified by similarity to SP:P36879; match to protein family HMM PF00005. (308 aa)    
Predicted Functional Partners:
MCA2121
ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
  
 0.967
MCA0173
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01SM01832; match to protein family HMM PF00005.
    
0.844
MCA0894
ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
  
 
0.744
MCA2549
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     
0.690
MCA2123
Ppx/GppA phosphatase; Identified by match to protein family HMM PF02541; Belongs to the GppA/Ppx family.
       0.512
MCA0557
ABC transporter, permease protein; Identified by similarity to SP:P31993; match to protein family HMM PF01061.
 
    0.453
MCA1562
Putative ABC transporter, permease protein; Identified by similarity to GP:14531034.
  
 
 0.405
MCA3077
Conserved hypothetical integral membrane protein; Identified by similarity to GP:17135440; similarity to OMNI:NT01MC2877.
  
 
 0.404
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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