STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2128Hypothetical protein; Identified by Glimmer2; putative. (261 aa)    
Predicted Functional Partners:
MCA2129
Identified by similarity to GP:4580028; match to protein family HMM PF07731; match to protein family HMM PF07732.
   
 
 0.774
MCA2127
Asparagine synthetase, glutamine-hydrolyzing; Identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
       0.532
MCA1101
Identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732.
   
 
 0.512
MCA2011
Identified by similarity to SP:Q8Z9E1; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409.
   
 
 0.512
MCA0317
Selenium-binding family protein; Identified by similarity to SP:Q63836.
   
   0.496
MCA1279
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SMB00179; match to protein family HMM TIGR02276.
   
   0.496
MCA2380
Conserved hypothetical protein; Identified by similarity to GP:19915811; match to protein family HMM PF00058; match to protein family HMM TIGR02276.
   
   0.496
MCA2130
Conserved hypothetical protein; Identified by similarity to GP:3282847.
       0.454
MCA0879
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
     
 0.440
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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