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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2138Conserved hypothetical protein; Identified by similarity to SP:Q46868; match to protein family HMM PF04380. (83 aa)    
Predicted Functional Partners:
smg
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01XF00924; match to protein family HMM PF04361; Belongs to the Smg family.
  
     0.715
MCA2139
Mg chelatase-related protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.
       0.650
MCA2771
Conserved hypothetical protein; Identified by similarity to SP:Q9HTW5; match to protein family HMM TIGR02292; Belongs to the UPF0149 family.
  
    0.645
rep
ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction.
       0.591
MCA2018
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA05065; match to protein family HMM PF06843.
  
   
 0.564
MCA0665
Putative glycine cleavage system transcriptional repressor; Identified by similarity to SP:P23483.
  
     0.532
sspA
Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.
  
    0.468
MCA2137
Nitrogen regulatory protein P-II; Identified by similarity to SP:P38504; match to protein family HMM PF00543; Belongs to the P(II) protein family.
       0.463
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.449
sspB
Identified by similarity to SP:P25663; match to protein family HMM PF04386.
  
     0.445
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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