Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA2157Putative ribonuclease BN; Identified by similarity to GP:17428575; match to protein family HMM PF03631; match to protein family HMM TIGR00765. (430 aa)    
Predicted Functional Partners:
petC
Ubiquinol--cytochrome c reductase, cytochrome c1; Identified by similarity to SP:P08501; match to protein family HMM PF02167.
      
 0.679
MCA3111
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM02805.
   
  
 0.634
mmoX
Methane monooxygenase, A subunit, alpha chain; Responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyzes the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds; Belongs to the TmoA/XamoA family.
     
 0.630
mopB
Outer membrane protein MopB; Identified by similarity to GP:4104020; match to protein family HMM PF00691; match to protein family HMM PF02412.
      
 0.630
MCA1186
Putative membrane protein.
     
 0.626
MCA0421
Cytochrome c5530 family protein.
      
 0.618
pheS
phenylalanyl-tRNA synthetase, alpha subunit; Identified by similarity to SP:P08312; match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
      
 0.618
MCA1068
Cytochrome c family protein; Identified by similarity to SP:Q52369; match to protein family HMM PF00034.
     
 0.618
MCA1185
Cytochrome c family protein; Identified by similarity to OMNI:NTL03PA02482; match to protein family HMM PF00034.
     
 0.618
MCA1187
Identified by match to protein family HMM PF00034.
     
 0.618
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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