Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2169BNR repeat domain protein; Identified by match to protein family HMM PF02012. (459 aa)    
Predicted Functional Partners:
MCA2170
Putative copper resistance protein; Identified by similarity to SP:P12376; match to protein family HMM PF04234.
 
     0.916
MCA1289
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.642
MCA1701
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.595
MCA1695
Putative cell division protein FtsK; Identified by similarity to SP:P46889; match to protein family HMM PF01580.
    
 
 0.586
MCA2180
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.570
MCA2477
Conserved hypothetical protein; Identified by similarity to SP:P37512; match to protein family HMM PF03190.
    
   0.566
MCA1084
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.542
MCA2112
Conserved hypothetical protein; Identified by similarity to GP:4378852.
  
     0.534
MCA1689
Hypothetical protein; Identified by Glimmer2; putative.
  
 
   0.519
MCA1631
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.498
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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