STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2170Putative copper resistance protein; Identified by similarity to SP:P12376; match to protein family HMM PF04234. (144 aa)    
Predicted Functional Partners:
MCA2169
BNR repeat domain protein; Identified by match to protein family HMM PF02012.
 
     0.916
MCA1192
Conserved domain protein; Identified by similarity to OMNI:DR1885.
  
  
 0.739
MCA1027
Conserved hypothetical protein; Identified by similarity to OMNI:CC1782; match to protein family HMM PF03929.
  
    0.546
MCA1800
Putative oxidoreductase; Identified by similarity to GP:19879585; match to protein family HMM PF07992.
    
   0.422
MCA3004
Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992.
    
   0.422
MCA0807
Copper resistance protein; Identified by match to protein family HMM PF05425.
 
  
 0.416
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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