STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2181Identified by match to protein family HMM PF00034. (270 aa)    
Predicted Functional Partners:
MCA2603
Cytochrome c family protein; Identified by similarity to SP:P43302; match to protein family HMM PF00034.
  
   
 0.649
MCA1084
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.597
MCA2182
Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family.
       0.570
MCA1068
Cytochrome c family protein; Identified by similarity to SP:Q52369; match to protein family HMM PF00034.
  
   
 0.538
MCA1689
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.518
MCA1946
Putative lipoprotein.
  
     0.484
MCA0945
Conserved hypothetical protein; Identified by similarity to SP:Q49116.
  
     0.465
MCA1701
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.455
MCA2115
Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464.
  
     0.454
petC
Ubiquinol--cytochrome c reductase, cytochrome c1; Identified by similarity to SP:P08501; match to protein family HMM PF02167.
  
  
 0.445
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.