STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2199Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023. (442 aa)    
Predicted Functional Partners:
MCA0908
ATPase, AAA family; Identified by match to protein family HMM PF00004.
 
 
 0.932
MCA0262
ATPase, AAA family; Identified by match to protein family HMM PF00004.
   
 0.920
MCA1006
Acyltransferase family protein; Identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553.
  
 0.904
hepA
RNA polymerase-associated protein HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
   
 0.890
MCA0593
Identified by similarity to GP:4557191; match to protein family HMM PF00069; match to protein family HMM PF00481.
  
 
 0.879
MCA2703
Serine protease, trypsin family; Identified by match to protein family HMM PF00089.
  
 
 0.853
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.852
MCA2486
Identified by match to protein family HMM PF00850.
   
 0.850
hscA
Chaperone protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.
 
 
 0.846
MCA1512
TPR domain protein; Identified by similarity to SP:P21296; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
 0.836
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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