MCA2227 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCA2227

Hemagglutinin-related protein; Identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901. (3349 aa)

Predicted Functional Partners:

MCA2226

0.980

MCA1401

0.829

MCA2238

0.813

MCA2235

0.791

MCA2236

0.782

MCA2329

0.767

MCA2326

0.758

MCA2237

0.753

MCA1768

0.738

MCA2224

0.701

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MCA1401	MCA2227	Arylesterase; Identified by similarity to SP:Q07792; match to protein family HMM PF00657.	Hemagglutinin-related protein; Identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901.	0.829
MCA1768	MCA2224	Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.	PKD domain protein; Identified by match to protein family HMM PF00801.	0.699
MCA1768	MCA2226	Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.	Conserved hypothetical protein; Identified by similarity to GP:9946574; match to protein family HMM PF07244.	0.620
MCA1768	MCA2227	Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.	Hemagglutinin-related protein; Identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901.	0.738
MCA1768	MCA2235	Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA00697.	0.711
MCA1768	MCA2236	Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.	Putative TonB-dependent receptor; Identified by similarity to OMNI:NTL03PA00696.	0.740
MCA1768	MCA2238	Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.	MotA/TolQ/ExbB proton channel family domain protein; Identified by match to protein family HMM PF01618.	0.721
MCA1768	MCA2326	Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.	Conserved domain protein.	0.761
MCA1768	MCA2329	Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.	Putative outer membrane efflux family protein; Identified by match to protein family HMM PF02321.	0.770
MCA2224	MCA1768	PKD domain protein; Identified by match to protein family HMM PF00801.	Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.	0.699
MCA2224	MCA2226	PKD domain protein; Identified by match to protein family HMM PF00801.	Conserved hypothetical protein; Identified by similarity to GP:9946574; match to protein family HMM PF07244.	0.498
MCA2224	MCA2227	PKD domain protein; Identified by match to protein family HMM PF00801.	Hemagglutinin-related protein; Identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901.	0.701
MCA2224	MCA2235	PKD domain protein; Identified by match to protein family HMM PF00801.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA00697.	0.527
MCA2224	MCA2236	PKD domain protein; Identified by match to protein family HMM PF00801.	Putative TonB-dependent receptor; Identified by similarity to OMNI:NTL03PA00696.	0.510
MCA2224	MCA2238	PKD domain protein; Identified by match to protein family HMM PF00801.	MotA/TolQ/ExbB proton channel family domain protein; Identified by match to protein family HMM PF01618.	0.450
MCA2224	MCA2326	PKD domain protein; Identified by match to protein family HMM PF00801.	Conserved domain protein.	0.629
MCA2224	MCA2329	PKD domain protein; Identified by match to protein family HMM PF00801.	Putative outer membrane efflux family protein; Identified by match to protein family HMM PF02321.	0.699
MCA2226	MCA1768	Conserved hypothetical protein; Identified by similarity to GP:9946574; match to protein family HMM PF07244.	Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.	0.620
MCA2226	MCA2224	Conserved hypothetical protein; Identified by similarity to GP:9946574; match to protein family HMM PF07244.	PKD domain protein; Identified by match to protein family HMM PF00801.	0.498
MCA2226	MCA2227	Conserved hypothetical protein; Identified by similarity to GP:9946574; match to protein family HMM PF07244.	Hemagglutinin-related protein; Identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901.	0.980

page 1 of 5

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About