close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2230Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (362 aa)    
Predicted Functional Partners:
MCA2232
Outer membrane efflux family protein; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
  0.982
MCA2131
Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.948
MCA1277
Putative outer membrane protein TolC; Identified by similarity to SP:P02930; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
  
  0.939
MCA1723
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
   
  0.926
MCA2231
Identified by match to protein family HMM PF00873.
   0.926
MCA2132
HlyD family secretion protein; Identified by similarity to OMNI:VC0913; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 
0.908
MCA1597
Multidrug efflux transporter MexF; Identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
   0.827
MCA1360
Hydrophobe/amphiphile Efflux-1 (HAE1) family protein; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
   0.824
MCA2816
Outer membrane efflux family protein; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
   0.732
MCA1595
Multidrug efflux system outer membrane subunit; Identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
   0.650
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.