STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2285Hypothetical protein; Identified by Glimmer2; putative. (342 aa)    
Predicted Functional Partners:
MCA0717
Putative lipoprotein; Identified by similarity to GP:17430383.
  
     0.659
MCA2118
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00882; match to protein family HMM PF03065.
  
     0.653
MCA0716
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.647
MCA0310
Conserved domain protein; Identified by similarity to OMNI:NTL01AT1832.
  
     0.644
MCA0994
Conserved hypothetical protein; Identified by similarity to GP:17428164.
  
     0.598
MCA0408
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00205.
  
     0.590
MCA1827
Conserved hypothetical protein; Identified by similarity to GP:12698380.
  
     0.583
MCA1551
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.574
MCA2284
Putative hydrolase; Identified by similarity to SP:P36653; match to protein family HMM PF05728.
       0.547
MCA1018
ErfK/YbiS/YcfS/YnhG family protein; Identified by similarity to OMNI:NTL02SC5233; match to protein family HMM PF03734.
  
     0.543
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.