Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA2325Efflux transporter, RND family, MFP subunit; Identified by similarity to GP:8388788; match to protein family HMM TIGR01730. (389 aa)    
Predicted Functional Partners:
MCA2324
Heavy metal efflux pump, CzcA family; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.953
MCA2326
Conserved domain protein.
 
   0.951
MCA2329
Putative outer membrane efflux family protein; Identified by match to protein family HMM PF02321.
 
   0.801
MCA1768
Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.
  
   0.771
MCA1767
Heavy metal efflux pump, CzcA family; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   0.757
MCA2227
Hemagglutinin-related protein; Identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901.
  
     0.699
MCA2236
Putative TonB-dependent receptor; Identified by similarity to OMNI:NTL03PA00696.
  
     0.693
MCA2238
MotA/TolQ/ExbB proton channel family domain protein; Identified by match to protein family HMM PF01618.
  
     0.670
MCA1018
ErfK/YbiS/YcfS/YnhG family protein; Identified by similarity to OMNI:NTL02SC5233; match to protein family HMM PF03734.
  
    0.669
MCA2235
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA00697.
  
     0.653
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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