Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2341ParA family protein; Identified by similarity to GP:1688245; match to protein family HMM PF01656. (207 aa)    
Predicted Functional Partners:
MCA0004
ParB family protein; Identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.
 
 
 0.878
MCA2342
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
MCA2654
Prophage LambdaMc01, DNA methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.552
MCA2655
Prophage LambdaMc01, DNA methyltransferase; Identified by similarity to GP:17427857; match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.552
htrA
Protease DO; Identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Belongs to the peptidase S1C family.
       0.488
MCA0769
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176.
  
  
 0.472
rpmG
Ribosomal protein L33; Identified by similarity to SP:P02436; match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family.
       0.465
rpmB
Ribosomal protein L28; Identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
       0.439
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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