STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2380Conserved hypothetical protein; Identified by similarity to GP:19915811; match to protein family HMM PF00058; match to protein family HMM TIGR02276. (250 aa)    
Predicted Functional Partners:
MCA2381
MxaD protein; Identified by similarity to GP:773184.
 
     0.873
MCA1278
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SMB00178.
 
  
 0.807
MCA0299
Putative methanol dehydrogenase protein, large subunit; Identified by similarity to SP:P15279; match to protein family HMM PF01011.
 
    0.744
MCA1883
Non-ribosomal peptide synthetase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733; Belongs to the ATP-dependent AMP-binding enzyme family.
  
    0.744
mxaF
Methanol dehydrogenase protein, large subunit; Identified by similarity to SP:P16027; match to protein family HMM PF01011.
 
    0.743
MCA1281
ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
 
   
 0.740
MCA0789
MxaD protein; Identified by similarity to GP:773184.
 
     0.730
MCA1280
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01SMB00184; match to protein family HMM PF00005.
 
    0.706
MCA2618
Cytochrome c-555; Identified by similarity to SP:P04369; match to protein family HMM PF00034.
 
   0.667
MCA0300
MxaJ protein; Identified by similarity to GP:1657793.
 
     0.627
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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