Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA2400Putative nitric-oxide reductase, B subunit; Identified by similarity to SP:P98008. (481 aa)    
Predicted Functional Partners:
MCA2401
Conserved domain protein; Identified by similarity to OMNI:NTL01ATA0505.
 
 0.999
cbbQ
cbbQ protein; Identified by similarity to GP:4105515; match to protein family HMM PF07728.
 
  
 0.926
cbbO
cbbO protein; Identified by similarity to GP:4433775; match to protein family HMM PF00092.
 
  
 0.922
ccp
Cytochrome c; Identified by similarity to GP:5070630.
  
 
 0.763
MCA0879
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.732
MCA2397
Cytochrome c oxidase, subunit II; Identified by similarity to SP:P98052.
 
   
 0.711
MCA2396
Cytochrome c oxidase, subunit I; Identified by similarity to GP:4001615; match to protein family HMM PF00115.
 
   
 0.708
MCA0781
Cytochrome c family protein; Identified by similarity to SP:P14774; match to protein family HMM PF00034.
 
 
 0.697
MCA2405
Cytochrome c family protein; Identified by similarity to SP:P95339; match to protein family HMM PF00034.
  
  
 0.690
MCA2395
Cytochrome c family protein; Identified by similarity to SP:P43302; match to protein family HMM PF00034.
 
    0.670
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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