Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2405Cytochrome c family protein; Identified by similarity to SP:P95339; match to protein family HMM PF00034. (105 aa)    
Predicted Functional Partners:
MCA1504
Putative sulfite oxidase SoxC; Identified by similarity to GP:7381242; match to protein family HMM PF00174; match to protein family HMM PF02012; match to protein family HMM PF03404; match to protein family HMM TIGR01409.
   
 
 0.767
MCA0318
Putative SCO1/SenC family protein/methylamine utilization protein MauG; Identified by similarity to SP:Q49128; match to protein family HMM PF03150.
 
  
 0.737
MCA1906
Identified by similarity to SP:Q51658; match to protein family HMM PF03150.
  
  
 0.719
msrP
Tat (twin-arginine translocation) pathway signal sequence domain protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-st [...]
   
 
 0.700
MCA2400
Putative nitric-oxide reductase, B subunit; Identified by similarity to SP:P98008.
  
  
 0.690
MCA2603
Cytochrome c family protein; Identified by similarity to SP:P43302; match to protein family HMM PF00034.
   
  
 0.685
MCA2401
Conserved domain protein; Identified by similarity to OMNI:NTL01ATA0505.
  
  
 0.679
cydA
Cytochrome d ubiquinol oxidase, subunit I; Identified by similarity to SP:Q09049; match to protein family HMM PF01654.
     
 0.675
MCA2181
Identified by match to protein family HMM PF00034.
  
   
 0.671
MCA0879
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
  
 0.650
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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