MCA2415 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCA2415

Glycosyl transferase, group 1 family; Identified by match to protein family HMM PF00534. (374 aa)

Predicted Functional Partners:

MCA2126

0.777

MCA2712

0.728

MCA0613

0.720

MCA2416

0.718

MCA2417

0.581

MCA0152

0.517

MCA0147

0.511

MCA2414

0.479

MCA2107

0.470

glgB

0.443

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCA0147	MCA0152	MCA0147	MCA0152	Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.	Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.759
MCA0147	MCA0613	MCA0147	MCA0613	Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.	Identified by similarity to GP:6690125; match to protein family HMM PF00534.	0.829
MCA0147	MCA2107	MCA0147	MCA2107	Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.	Putative nonribosomal peptide synthetase; Identified by similarity to GP:9715733; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353; Belongs to the ATP-dependent AMP-binding enzyme family.	0.920
MCA0147	MCA2126	MCA0147	MCA2126	Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.	Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.544
MCA0147	MCA2414	MCA0147	MCA2414	Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.	Glycosyl transferase, group 1 family domain protein; Identified by match to protein family HMM PF00534.	0.512
MCA0147	MCA2415	MCA0147	MCA2415	Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.	Glycosyl transferase, group 1 family; Identified by match to protein family HMM PF00534.	0.511
MCA0152	MCA0147	MCA0152	MCA0147	Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.	Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.	0.759
MCA0152	MCA2107	MCA0152	MCA2107	Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.	Putative nonribosomal peptide synthetase; Identified by similarity to GP:9715733; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353; Belongs to the ATP-dependent AMP-binding enzyme family.	0.547
MCA0152	MCA2414	MCA0152	MCA2414	Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.	Glycosyl transferase, group 1 family domain protein; Identified by match to protein family HMM PF00534.	0.605
MCA0152	MCA2415	MCA0152	MCA2415	Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.	Glycosyl transferase, group 1 family; Identified by match to protein family HMM PF00534.	0.517
MCA0152	glgB	MCA0152	MCA1475	Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.443
MCA0613	MCA0147	MCA0613	MCA0147	Identified by similarity to GP:6690125; match to protein family HMM PF00534.	Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.	0.829
MCA0613	MCA2107	MCA0613	MCA2107	Identified by similarity to GP:6690125; match to protein family HMM PF00534.	Putative nonribosomal peptide synthetase; Identified by similarity to GP:9715733; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353; Belongs to the ATP-dependent AMP-binding enzyme family.	0.470
MCA0613	MCA2414	MCA0613	MCA2414	Identified by similarity to GP:6690125; match to protein family HMM PF00534.	Glycosyl transferase, group 1 family domain protein; Identified by match to protein family HMM PF00534.	0.444
MCA0613	MCA2415	MCA0613	MCA2415	Identified by similarity to GP:6690125; match to protein family HMM PF00534.	Glycosyl transferase, group 1 family; Identified by match to protein family HMM PF00534.	0.720
MCA0613	glgB	MCA0613	MCA1475	Identified by similarity to GP:6690125; match to protein family HMM PF00534.	1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.	0.443
MCA2107	MCA0147	MCA2107	MCA0147	Putative nonribosomal peptide synthetase; Identified by similarity to GP:9715733; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353; Belongs to the ATP-dependent AMP-binding enzyme family.	Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.	0.920
MCA2107	MCA0152	MCA2107	MCA0152	Putative nonribosomal peptide synthetase; Identified by similarity to GP:9715733; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353; Belongs to the ATP-dependent AMP-binding enzyme family.	Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.547
MCA2107	MCA0613	MCA2107	MCA0613	Putative nonribosomal peptide synthetase; Identified by similarity to GP:9715733; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353; Belongs to the ATP-dependent AMP-binding enzyme family.	Identified by similarity to GP:6690125; match to protein family HMM PF00534.	0.470
MCA2107	MCA2126	MCA2107	MCA2126	Putative nonribosomal peptide synthetase; Identified by similarity to GP:9715733; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353; Belongs to the ATP-dependent AMP-binding enzyme family.	Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.470

page 1 of 3

Server load: low (38%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About