Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2417ZIP zinc transporter family protein; Identified by similarity to OMNI:NTL03PA04468; match to protein family HMM PF02535. (279 aa)    
Predicted Functional Partners:
MCA2416
Conserved hypothetical protein; Identified by similarity to GP:8246788; match to protein family HMM PF01169.
  
    0.632
MCA2415
Glycosyl transferase, group 1 family; Identified by match to protein family HMM PF00534.
   
   0.581
MCA2420
Acetyltransferase, GNAT family; Identified by similarity to GP:14026256; match to protein family HMM PF00583; match to protein family HMM PF02629.
  
    0.469
pcm-2
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
  
    0.458
surE
Acid phosphatase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.453
MCA2421
Conserved hypothetical protein; Identified by similarity to GP:29540766.
       0.453
MCA1900
Cation efflux family protein; Identified by similarity to GP:15025562; match to protein family HMM PF01545; match to protein family HMM TIGR01297.
   
 0.403
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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