Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA2477Conserved hypothetical protein; Identified by similarity to SP:P37512; match to protein family HMM PF03190. (679 aa)    
Predicted Functional Partners:
MCA2478
Hypothetical protein; Identified by Glimmer2; putative.
       0.586
MCA0765
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.566
MCA0997
Putative membrane protein; Identified by similarity to OMNI:NTL01PA01213.
    
   0.566
MCA1217
Putative metalloprotease; Identified by match to protein family HMM PF07504.
    
   0.566
MCA1422
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.566
MCA2169
BNR repeat domain protein; Identified by match to protein family HMM PF02012.
    
   0.566
MCA2928
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.566
MCA2476
Riboflavin-specific deaminase/GTP cyclohydrolase II; Matches only weakly to riboflavin-specific deaminase in the N terminal end of the protein; identified by match to protein family HMM PF00925.
       0.413
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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