STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2510Putative lipoprotein. (242 aa)    
Predicted Functional Partners:
MCA0340
Putative membrane protein; Identified by similarity to GP:17133197.
  
     0.729
MCA0759
Conserved hypothetical protein; Identified by similarity to OMNI:CC2267; match to protein family HMM PF07876.
  
     0.637
MCA0807
Copper resistance protein; Identified by match to protein family HMM PF05425.
  
     0.614
MCA2509
Identified by match to protein family HMM PF00654.
       0.605
MCA1641
Conserved hypothetical protein; Identified by similarity to GP:17431966.
  
     0.598
MCA0342
Identified by match to protein family HMM PF00488.
  
     0.574
MCA2129
Identified by similarity to GP:4580028; match to protein family HMM PF07731; match to protein family HMM PF07732.
  
     0.551
MCA1946
Putative lipoprotein.
  
     0.549
MCA1870
ribD C-terminal domain protein.
  
     0.525
MCA2511
ISMca1, transposase; Identified by match to protein family HMM PF01609.
       0.512
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.