Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA2547Identified by similarity to GP:4753136; match to protein family HMM PF00534. (396 aa)    
Predicted Functional Partners:
MCA2545
Putative membrane protein.
       0.773
MCA2546
Conserved domain protein; Identified by similarity to OMNI:NTL01AP01225.
       0.773
MCA2548
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
MCA2550
Efflux ABC-transporter, permease protein.
  
    0.656
MCA2549
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
   0.652
MCA1433
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
    
0.592
MCA0474
ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.
    
   0.565
MCA1428
Glycosyl transferase, group 1 family protein; Identified by similarity to OMNI:CC0755; match to protein family HMM PF00534.
  
     0.552
MCA1160
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
     0.494
MCA0147
Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.
 
  
 0.491
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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