MCA2550 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCA2550

Efflux ABC-transporter, permease protein. (260 aa)

Predicted Functional Partners:

MCA2549

0.997

MCA0625

0.987

MCA0093

0.939

MCA0626

0.927

MCA2547

0.656

MCA2561

0.653

MCA0620

0.647

MCA2548

0.629

MCA2545

0.623

MCA2546

0.623

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MCA0093	MCA0620	ABC transporter, ATP-binding family protein; Identified by match to protein family HMM PF00005.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.626
MCA0093	MCA0626	ABC transporter, ATP-binding family protein; Identified by match to protein family HMM PF00005.	Putative polysaccharide efflux ABC-transporter, permease protein; Identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061.	0.939
MCA0093	MCA2550	ABC transporter, ATP-binding family protein; Identified by match to protein family HMM PF00005.	Efflux ABC-transporter, permease protein.	0.939
MCA0093	MCA2561	ABC transporter, ATP-binding family protein; Identified by match to protein family HMM PF00005.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.609
MCA0620	MCA0093	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	ABC transporter, ATP-binding family protein; Identified by match to protein family HMM PF00005.	0.626
MCA0620	MCA0625	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Putative polysaccharide efflux ABC transporter, ATP-binding protein; Identified by similarity to GP:15025336; match to protein family HMM PF00005.	0.729
MCA0620	MCA0626	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Putative polysaccharide efflux ABC-transporter, permease protein; Identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061.	0.740
MCA0620	MCA2549	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.650
MCA0620	MCA2550	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Efflux ABC-transporter, permease protein.	0.647
MCA0620	MCA2561	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.968
MCA0625	MCA0620	Putative polysaccharide efflux ABC transporter, ATP-binding protein; Identified by similarity to GP:15025336; match to protein family HMM PF00005.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.729
MCA0625	MCA0626	Putative polysaccharide efflux ABC transporter, ATP-binding protein; Identified by similarity to GP:15025336; match to protein family HMM PF00005.	Putative polysaccharide efflux ABC-transporter, permease protein; Identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061.	0.997
MCA0625	MCA2549	Putative polysaccharide efflux ABC transporter, ATP-binding protein; Identified by similarity to GP:15025336; match to protein family HMM PF00005.	Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.919
MCA0625	MCA2550	Putative polysaccharide efflux ABC transporter, ATP-binding protein; Identified by similarity to GP:15025336; match to protein family HMM PF00005.	Efflux ABC-transporter, permease protein.	0.987
MCA0625	MCA2561	Putative polysaccharide efflux ABC transporter, ATP-binding protein; Identified by similarity to GP:15025336; match to protein family HMM PF00005.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.638
MCA0626	MCA0093	Putative polysaccharide efflux ABC-transporter, permease protein; Identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061.	ABC transporter, ATP-binding family protein; Identified by match to protein family HMM PF00005.	0.939
MCA0626	MCA0620	Putative polysaccharide efflux ABC-transporter, permease protein; Identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.740
MCA0626	MCA0625	Putative polysaccharide efflux ABC-transporter, permease protein; Identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061.	Putative polysaccharide efflux ABC transporter, ATP-binding protein; Identified by similarity to GP:15025336; match to protein family HMM PF00005.	0.997
MCA0626	MCA2549	Putative polysaccharide efflux ABC-transporter, permease protein; Identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061.	Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.987
MCA0626	MCA2550	Putative polysaccharide efflux ABC-transporter, permease protein; Identified by similarity to OMNI:NTL01SS00318; match to protein family HMM PF01061.	Efflux ABC-transporter, permease protein.	0.927

page 1 of 4

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About