Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2592Conserved hypothetical protein; Identified by similarity to OMNI:NT01MC0675. (220 aa)    
Predicted Functional Partners:
MCA0310
Conserved domain protein; Identified by similarity to OMNI:NTL01AT1832.
  
     0.611
nspC
Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
       0.546
MCA1122
General secretion pathway protein M; Identified by similarity to GP:496290.
  
     0.529
MCA2591
Aquaporin Z domain protein.
       0.528
MCA2590
Putative cytochrome c peroxidase family protein.
 
     0.441
MCA2119
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00882.
  
     0.425
MCA1551
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.404
MCA2118
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00882; match to protein family HMM PF03065.
  
     0.403
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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