Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2636Hypothetical protein; Identified by Glimmer2; putative. (87 aa)    
Predicted Functional Partners:
MCA2632
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS3173.
       0.773
MCA2633
Prophage LambdaMc01, site-specific recombinase, resolvase family, truncation.
       0.773
MCA2634
Prophage LambdaMc01, site-specific recombinase, resolvase family; Identified by similarity to GP:17430196; match to protein family HMM PF00239; match to protein family HMM PF07508.
       0.773
MCA2635
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS3170.
       0.773
MCA2637
Conserved hypothetical protein; Identified by similarity to GP:17430265.
       0.761
MCA2638
Conserved hypothetical protein; Identified by similarity to GP:3378296.
       0.710
MCA2639
Conserved hypothetical protein; Identified by similarity to GP:17430264; match to protein family HMM PF00376; match to protein family HMM TIGR01764.
       0.710
MCA2631
Hypothetical protein; Identified by Glimmer2; putative.
       0.497
MCA2640
Conserved hypothetical protein; Identified by similarity to GP:17430263.
       0.437
MCA2641
Conserved hypothetical protein; Identified by similarity to GP:17430262.
       0.429
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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