Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2640Conserved hypothetical protein; Identified by similarity to GP:17430263. (87 aa)    
Predicted Functional Partners:
MCA2641
Conserved hypothetical protein; Identified by similarity to GP:17430262.
       0.779
MCA2642
Conserved domain protein; Identified by similarity to OMNI:NTL01XF01664; match to protein family HMM PF02498.
       0.779
MCA2643
Conserved hypothetical protein; Identified by similarity to GP:17427847.
       0.779
MCA2644
Conserved hypothetical protein; Identified by similarity to GP:17430259.
       0.779
MCA2645
Conserved hypothetical protein; Identified by similarity to GP:17430258.
  
    0.623
MCA2646
Conserved hypothetical protein; Identified by similarity to GP:17430256.
       0.615
MCA2647
Conserved hypothetical protein; Identified by similarity to GP:17430255.
       0.612
MCA2648
Prophage LambdaMc01, DNA primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.
       0.610
MCA2638
Conserved hypothetical protein; Identified by similarity to GP:3378296.
  
    0.494
MCA2639
Conserved hypothetical protein; Identified by similarity to GP:17430264; match to protein family HMM PF00376; match to protein family HMM TIGR01764.
       0.472
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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