Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA2657Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RSA0579. (178 aa)    
Predicted Functional Partners:
MCA2658
Prophage LambdaMc01, terminase, large subunit; Identified by match to protein family HMM PF05876.
 
     0.957
MCA2660
Prophage LambdaMc01, portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
 
     0.956
MCA2663
Conserved hypothetical protein; Identified by similarity to GP:6723249.
 
     0.947
MCA2662
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
 
     0.946
MCA2661
Prophage LambdaMc01, peptidase, U7 family; Identified by match to protein family HMM PF01343.
 
     0.937
MCA2656
Conserved hypothetical protein; Identified by similarity to GP:17430238.
 
     0.902
MCA2678
Conserved hypothetical protein; Identified by similarity to GP:17427893.
 
     0.839
MCA2659
Conserved hypothetical protein; Identified by similarity to GP:17427868.
       0.817
MCA2667
Conserved hypothetical protein; Identified by similarity to GP:17427875.
       0.789
MCA2654
Prophage LambdaMc01, DNA methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.788
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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