Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2680Prophage LambdaMc01, lysozyme; Identified by similarity to SP:P10439; match to protein family HMM PF00959. (152 aa)    
Predicted Functional Partners:
MCA2678
Conserved hypothetical protein; Identified by similarity to GP:17427893.
 
     0.893
MCA2670
Putative prophage LambdaMc01, tail tape measure protein; Identified by similarity to GP:6901589.
 
     0.806
MCA2679
Conserved hypothetical protein; Identified by similarity to GP:17430219.
       0.788
MCA2662
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
 
    0.669
MCA2656
Conserved hypothetical protein; Identified by similarity to GP:17430238.
 
     0.630
MCA2657
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RSA0579.
 
     0.628
MCA2660
Prophage LambdaMc01, portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
 
   
 0.619
MCA2658
Prophage LambdaMc01, terminase, large subunit; Identified by match to protein family HMM PF05876.
 
   
 0.614
MCA1225
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.586
MCA2675
Conserved hypothetical protein; Identified by similarity to GP:17427890.
       0.575
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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