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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2688Hypothetical protein; Identified by Glimmer2; putative. (120 aa)    
Predicted Functional Partners:
MCA2926
Prophage MuMc02, virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
   
    0.818
MCA1615
Site-specific recombinase, resolvase family; Identified by similarity to GP:2346994; match to protein family HMM PF00239; match to protein family HMM PF02796; match to protein family HMM TIGR01199.
   
    0.678
MCA2634
Prophage LambdaMc01, site-specific recombinase, resolvase family; Identified by similarity to GP:17430196; match to protein family HMM PF00239; match to protein family HMM PF07508.
   
    0.678
MCA2635
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS3170.
   
    0.678
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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