Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA2712Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SMB00554. (222 aa)    
Predicted Functional Partners:
MCA2713
Putative lipopolysaccharide heptosyltransferase-1; Identified by similarity to SP:P24173; match to protein family HMM PF01075.
 
     0.932
MCA2126
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
     0.770
MCA0541
Glycosyl transferase, group 1 family; Identified by match to protein family HMM PF00534.
 
     0.759
MCA2415
Glycosyl transferase, group 1 family; Identified by match to protein family HMM PF00534.
  
     0.728
MCA0310
Conserved domain protein; Identified by similarity to OMNI:NTL01AT1832.
  
     0.669
cyp51
Cytochrome P450 51; Identified by similarity to SP:P77901; match to protein family HMM PF00067.
  
    0.623
thiC
Thiamin biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.
       0.618
MCA2118
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00882; match to protein family HMM PF03065.
  
     0.610
MCA3075
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.601
MCA0733
Putative transposase; Identified by match to protein family HMM PF00665.
  
     0.590
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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