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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbOcbbO protein; Identified by similarity to GP:4433775; match to protein family HMM PF00092. (778 aa)    
Predicted Functional Partners:
cbbQ
cbbQ protein; Identified by similarity to GP:4105515; match to protein family HMM PF07728.
 
  
 0.988
cbbS
Ribulose bisphosphate carboxylase, small subunit; Identified by similarity to GP:17646562; match to protein family HMM PF00101.
 
   
 0.946
MCA2400
Putative nitric-oxide reductase, B subunit; Identified by similarity to SP:P98008.
 
  
 0.925
MCA2401
Conserved domain protein; Identified by similarity to OMNI:NTL01ATA0505.
 
  
 0.912
cbbL
Ribulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.
 
   
 0.876
moxR
moxR protein; Identified by similarity to SP:P29901; match to protein family HMM PF07726.
  
  
 0.708
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
     
 0.651
cbbP
Phosphoribulokinase; Identified by similarity to SP:P23015; match to protein family HMM PF00485.
  
   
 0.541
MCA3039
Rubisco operon transcriptional regulator; Identified by similarity to SP:P25544; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
   
 0.447
MCA2753
Hypothetical protein; Identified by Glimmer2; putative.
       0.433
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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