Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCA2758Putative membrane protein. (901 aa)    
Predicted Functional Partners:
MCA0811
Identified by match to protein family HMM PF01048.
 
     0.780
sqhC
Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.
 
     0.778
MCA0815
Identified by match to protein family HMM PF04055.
 
   
 0.777
MCA0118
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
     0.770
MCA1190
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.714
MCA2873
Squalene cyclase family protein; Identified by similarity to GP:1098635; match to protein family HMM PF00432; match to protein family HMM TIGR01787.
 
     0.673
MCA1017
Nucleoside diphosphate sugar epimerase family protein; Identified by match to protein family HMM PF07993.
  
     0.659
MCA0806
Conserved hypothetical protein; Identified by similarity to OMNI:NMB1963.
 
     0.658
MCA0491
Conserved hypothetical protein; Identified by similarity to GP:4378852.
  
     0.617
sqs
Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494.
 
     0.615
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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