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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2792Conserved hypothetical protein; Identified by similarity to OMNI:CC3693; match to protein family HMM PF05494. (217 aa)    
Predicted Functional Partners:
MCA1967
Conserved hypothetical protein; Identified by similarity to GP:4336800; match to protein family HMM PF02470.
 
 0.982
MCA1966
STAS domain protein; Identified by match to protein family HMM PF01740.
 
 
 0.939
MCA1968
Conserved hypothetical protein TIGR00056; Identified by similarity to OMNI:VC2519; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 
 
 0.929
MCA0806
Conserved hypothetical protein; Identified by similarity to OMNI:NMB1963.
  
  
 
0.926
vacJ
vacJ lipoprotein; Identified by similarity to SP:P76506; match to protein family HMM PF04333.
 
 
 
 0.897
MCA1969
ABC transporter, ATP-binding family protein; Identified by similarity to SP:P45393; match to protein family HMM PF00005.
 
 
 0.887
MCA0172
Mce family protein; Identified by similarity to GP:17427324; match to protein family HMM PF02470.
  
 0.883
MCA0174
Putative ABC transporter, permease protein; Gene cluster is evidence for assignment as ABC transporter subunit; identified by match to protein family HMM PF02405.
 
 
 0.867
MCA0173
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01SM01832; match to protein family HMM PF00005.
  
 
 0.844
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
   
 0.616
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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