Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA2808Conserved hypothetical protein; Identified by similarity to GP:17427115; match to protein family HMM PF00903. (145 aa)    
Predicted Functional Partners:
MCA0825
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
    0.657
MCA0370
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
    0.624
MCA2807
Putative methyltransferase.
 
     0.603
MCA2158
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF06445.
 
    0.486
cstA
Carbon starvation protein CstA; Identified by match to protein family HMM PF02554.
  
    0.467
MCA2806
Pyridoxal-dependent decarboxylase domain protein; Identified by similarity to OMNI:NTL01BH0567; match to protein family HMM PF00282.
 
    0.459
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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