Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA2832Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04736; match to protein family HMM PF05359. (1135 aa)    
Predicted Functional Partners:
MCA2833
Hypothetical protein; Identified by Glimmer2; putative.
       0.551
MCA0520
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.526
MCA2446
Putative outer membrane protein OmpH; Identified by similarity to SP:P31519; match to protein family HMM PF03938; Belongs to the skp family.
 
 
 0.462
MCA0080
Hypothetical protein; Identified by Glimmer2; putative.
  
 
   0.441
pcm-3
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
       0.423
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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