Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA2837Amine oxidase family, flavin-containing protein. (523 aa)    
Predicted Functional Partners:
MCA2486
Identified by match to protein family HMM PF00850.
    
 0.873
MCA2836
Putative molybdenum ABC transporter, ATP-binding protein; Identified by similarity to SP:P09833; match to protein family HMM PF00005; match to protein family HMM TIGR00638.
 
     0.780
MCA0219
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01XF02028; match to protein family HMM PF03692.
  
     0.757
MCA0225
Rieske 2Fe-2S family protein; Identified by similarity to GP:1754625; match to protein family HMM PF00355.
  
     0.741
hepA
RNA polymerase-associated protein HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
    
 0.741
MCA0228
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.729
MCA0207
Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.706
MCA0210
Putative nifZ protein.
  
     0.689
MCA0262
ATPase, AAA family; Identified by match to protein family HMM PF00004.
 
    0.670
MCA0261
Conserved hypothetical protein; Identified by similarity to OMNI:TM1186.
  
     0.656
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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