STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2837Amine oxidase family, flavin-containing protein. (523 aa)    
Predicted Functional Partners:
MCA2486
Identified by match to protein family HMM PF00850.
    
 0.929
MCA2836
Putative molybdenum ABC transporter, ATP-binding protein; Identified by similarity to SP:P09833; match to protein family HMM PF00005; match to protein family HMM TIGR00638.
 
     0.781
hepA
RNA polymerase-associated protein HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
    
 0.763
MCA0219
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01XF02028; match to protein family HMM PF03692.
  
     0.757
MCA0225
Rieske 2Fe-2S family protein; Identified by similarity to GP:1754625; match to protein family HMM PF00355.
  
     0.741
MCA0036
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.732
MCA2682
Prophage LambdaMc01, helicase, SNF2 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.
    
 0.732
MCA0228
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.729
MCA0207
Conserved hypothetical protein; Identified by similarity to GP:142364; match to protein family HMM PF00515; match to protein family HMM PF07719.
  
 
 
 0.707
MCA0210
Putative nifZ protein.
  
     0.689
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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