Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA2871Amino acid kinase family protein; Identified by match to protein family HMM PF00696. (197 aa)    
Predicted Functional Partners:
MCA2869
Putative S-layer protein.
 
  
 0.995
MCA2868
Conserved hypothetical protein; Identified by similarity to GP:2621925; match to protein family HMM PF02655.
 
   
 0.957
MCA1243
Conserved hypothetical protein; Identified by similarity to SP:Q58499.
   
 0.956
MCA2867
Identified by similarity to GP:11193065; match to protein family HMM PF00977; Belongs to the HisA/HisF family.
 
     0.909
pabB
Para-aminobenzoate synthase, component I; Identified by similarity to SP:P12679; match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553.
       0.822
MCA1245
Pterin-binding domain protein; Identified by match to protein family HMM PF00809.
 
     0.796
MCA1244
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.795
ffsA
Formylmethanofurane tetrahydromethanopterin formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.782
MCA2860
Formylmethanofuran dehydrogenase; Identified by similarity to GP:1881465.
 
     0.782
MCA2857
Putative formylmethanofurane dehydrogenase subunit; Identified by similarity to SP:Q59579; match to protein family HMM PF01493.
 
     0.779
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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