Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2872Identified by match to protein family HMM PF01360. (449 aa)    
Predicted Functional Partners:
MCA2873
Squalene cyclase family protein; Identified by similarity to GP:1098635; match to protein family HMM PF00432; match to protein family HMM TIGR01787.
  
 0.984
cyp51
Cytochrome P450 51; Identified by similarity to SP:P77901; match to protein family HMM PF00067.
 
 
 0.940
sqhC
Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.
   
 
 0.914
MCA1404
Identified by match to protein family HMM PF01565.
  
  
 0.890
MCA2461
Conserved hypothetical protein; Identified by similarity to GP:16944582.
  
     0.624
MCA0083
Methyltransferase, UbiE/COQ5 family; Identified by similarity to OMNI:NTL01SS01907.
  
     0.618
MCA1641
Conserved hypothetical protein; Identified by similarity to GP:17431966.
  
     0.587
MCA1689
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.586
MCA2173
Conserved hypothetical protein; Identified by similarity to OMNI:DRB0050.
  
     0.576
MCA1915
Cation-transporting ATPase, E1-E2 family; Identified by match to protein family HMM PF00122.
  
     0.559
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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