Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCA2873Squalene cyclase family protein; Identified by similarity to GP:1098635; match to protein family HMM PF00432; match to protein family HMM TIGR01787. (670 aa)    
Predicted Functional Partners:
MCA2872
Identified by match to protein family HMM PF01360.
  
 0.984
cyp51
Cytochrome P450 51; Identified by similarity to SP:P77901; match to protein family HMM PF00067.
 
 
 
 0.919
sqs
Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494.
 
  
 0.906
MCA1404
Identified by match to protein family HMM PF01565.
  
  
 0.823
MCA1017
Nucleoside diphosphate sugar epimerase family protein; Identified by match to protein family HMM PF07993.
  
   0.766
MCA0815
Identified by match to protein family HMM PF04055.
 
   
 0.721
MCA0811
Identified by match to protein family HMM PF01048.
 
   
 0.695
MCA0810
Putative membrane protein; Identified by similarity to GP:3164083.
 
     0.691
MCA2758
Putative membrane protein.
 
     0.673
ispA
Geranyltranstransferase; Identified by similarity to SP:P45204; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
  
 0.668
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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