Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA2900Prophage MuMc02, DNA methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family. (265 aa)    
Predicted Functional Partners:
MCA2959
Prophage MuMc02, peptidase, family S24; Identified by match to protein family HMM PF00717; Belongs to the peptidase S24 family.
  
   
 0.662
MCA2543
Ribonucleoside reductase precursor; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
     
 0.638
MCA1028
Endonuclease; Identified by similarity to SP:P08466; match to protein family HMM PF01223.
      
 0.627
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
     
 0.623
MCA2632
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS3173.
      
 0.618
MCA2689
Prophage LambdaMc01, ISMca4, transposase, OrfAB; Identified by match to protein family HMM PF00665; match to protein family HMM PF01527; match to protein family HMM TIGR01199.
      
 0.618
MCA2655
Prophage LambdaMc01, DNA methyltransferase; Identified by similarity to GP:17427857; match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.452
MCA2901
Hypothetical protein; Identified by Glimmer2; putative.
       0.435
MCA2902
Hypothetical protein; Identified by Glimmer2; putative.
       0.435
MCA2903
Hypothetical protein; Identified by Glimmer2; putative.
       0.435
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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