Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2914Prophage MuMc02, tail tape measure protein, TP901 family; Identified by match to protein family HMM TIGR01760. (993 aa)    
Predicted Functional Partners:
MCA2911
Putative prophage MuMc02, late control gene D protein; Identified by similarity to OMNI:NTL01ST4206.
 
  
 0.928
MCA2910
Prophage MuMc02, baseplate assembly protein V; Identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644.
 
  
 0.916
MCA2907
Putative prophage MuMc02, bacteriocin protein; Identified by similarity to GP:4586892; match to protein family HMM PF04865.
 
  
 0.911
MCA2918
Prophage MuMc02, major tail tube protein; Identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611.
 
  
 0.911
MCA2908
Putative prophage MuMc02, baseplate assembly protein W.
 
    0.904
MCA2919
Putative prophage MuMc02, tail sheath protein; Identified by match to protein family HMM PF04984.
 
  
 0.888
MCA2926
Prophage MuMc02, virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
 
    0.853
MCA2932
Conserved hypothetical protein; Identified by similarity to GP:16502705; match to protein family HMM PF06074.
 
     0.793
MCA2925
Conserved hypothetical protein; Identified by similarity to GP:16502708.
 
     0.783
MCA2927
Prophage MuMc02, F protein precursor; Includes an intein; identified by match to protein family HMM PF04233; match to protein family HMM TIGR01443; match to protein family HMM TIGR01641.
 
     0.750
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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