Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2923Conserved hypothetical protein; Identified by similarity to GP:6723249. (329 aa)    
Predicted Functional Partners:
MCA2924
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
 
     0.947
MCA2919
Putative prophage MuMc02, tail sheath protein; Identified by match to protein family HMM PF04984.
 
     0.834
MCA2660
Prophage LambdaMc01, portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
 
     0.791
MCA2662
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
 
     0.790
MCA2658
Prophage LambdaMc01, terminase, large subunit; Identified by match to protein family HMM PF05876.
 
     0.789
MCA2922
Conserved hypothetical protein; Identified by similarity to GP:16502711.
       0.783
MCA2657
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RSA0579.
 
     0.776
MCA2920
Conserved hypothetical protein; Identified by similarity to GP:16502713.
       0.773
MCA2921
Conserved hypothetical protein; Identified by similarity to GP:16502712.
       0.773
MCA2925
Conserved hypothetical protein; Identified by similarity to GP:16502708.
       0.760
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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