Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA2929Hypothetical protein; Identified by Glimmer2; putative. (164 aa)    
Predicted Functional Partners:
MCA2927
Prophage MuMc02, F protein precursor; Includes an intein; identified by match to protein family HMM PF04233; match to protein family HMM TIGR01443; match to protein family HMM TIGR01641.
       0.773
MCA2928
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
MCA2930
Putative prophage MuMc02, head decoration protein.
       0.773
MCA2926
Prophage MuMc02, virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
       0.528
MCA2931
Hypothetical protein; Identified by Glimmer2; putative.
       0.454
MCA2932
Conserved hypothetical protein; Identified by similarity to GP:16502705; match to protein family HMM PF06074.
       0.454
MCA2933
Putative prophage MuMc02, terminase, ATPase subunit; Identified by similarity to OMNI:DRA0094.
       0.454
MCA2934
Conserved hypothetical protein; Identified by similarity to GP:16502703.
       0.454
MCA2935
Conserved hypothetical protein; Identified by similarity to SP:Q9T1W8.
       0.454
MCA2936
Hypothetical protein; Identified by Glimmer2; putative.
       0.454
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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