Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2930Putative prophage MuMc02, head decoration protein. (466 aa)    
Predicted Functional Partners:
MCA2927
Prophage MuMc02, F protein precursor; Includes an intein; identified by match to protein family HMM PF04233; match to protein family HMM TIGR01443; match to protein family HMM TIGR01641.
 
    0.826
MCA2928
Hypothetical protein; Identified by Glimmer2; putative.
       0.775
MCA2929
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
MCA2932
Conserved hypothetical protein; Identified by similarity to GP:16502705; match to protein family HMM PF06074.
 
    0.647
MCA2161
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.589
MCA2926
Prophage MuMc02, virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
       0.572
bgl
Beta-glucosidase; Identified by similarity to SP:Q08638; match to protein family HMM PF00232.
   
   0.570
MCA2935
Conserved hypothetical protein; Identified by similarity to SP:Q9T1W8.
 
     0.544
MCA2919
Putative prophage MuMc02, tail sheath protein; Identified by match to protein family HMM PF04984.
 
  
 0.525
MCA2914
Prophage MuMc02, tail tape measure protein, TP901 family; Identified by match to protein family HMM TIGR01760.
 
   
 0.510
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
Server load: low (16%) [HD]