Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA2950Hypothetical protein; Identified by Glimmer2; putative. (77 aa)    
Predicted Functional Partners:
gam
Prophage MuMc02, host-nuclease inhibitor protein; Identified by similarity to SP:P06023; match to protein family HMM PF07352.
       0.773
MCA2949
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
MCA2951
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
MCA2946
Conserved hypothetical protein; Identified by similarity to OMNI:NMB0985.
       0.668
hup
Prophage MuMc02, DNA-binding protein HU; Identified by similarity to SP:P02346; match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family.
       0.668
MCA2952
Hypothetical protein; Identified by Glimmer2; putative.
       0.428
MCA2953
Hypothetical protein; Identified by Glimmer2; putative.
       0.428
MCA2954
Prophage MuMc02, transposition protein B; Identified by similarity to GP:974770.
       0.428
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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