STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2953Hypothetical protein; Identified by Glimmer2; putative. (195 aa)    
Predicted Functional Partners:
MCA2954
Prophage MuMc02, transposition protein B; Identified by similarity to GP:974770.
  
    0.803
MCA2952
Hypothetical protein; Identified by Glimmer2; putative.
       0.799
MCA2955
Putative prophage MuMc02, transposase protein A; Identified by match to protein family HMM PF00665.
       0.542
MCA0769
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176.
     
 0.454
MCA2946
Conserved hypothetical protein; Identified by similarity to OMNI:NMB0985.
       0.452
gam
Prophage MuMc02, host-nuclease inhibitor protein; Identified by similarity to SP:P06023; match to protein family HMM PF07352.
       0.450
MCA2949
Hypothetical protein; Identified by Glimmer2; putative.
       0.428
MCA2950
Hypothetical protein; Identified by Glimmer2; putative.
       0.428
MCA2951
Hypothetical protein; Identified by Glimmer2; putative.
       0.428
merA
Mercuric reductase; Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0). Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
     
 0.427
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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