Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCA2974PKD domain protein. (833 aa)    
Predicted Functional Partners:
nagZ
beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
     
  0.900
MCA2747
Cellulose-binding domain protein; Identified by match to protein family HMM PF00553.
     
  0.900
MCA2590
Putative cytochrome c peroxidase family protein.
  
   
 0.723
MCA0875
Serine protease, subtilase family; Identified by match to protein family HMM PF00082; match to protein family HMM PF05922; Belongs to the peptidase S8 family.
  
   
 0.711
MCA2704
Serine protease, subtilase family; Identified by match to protein family HMM PF00082.
  
   
 0.701
MCA0347
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
MCA0421
Cytochrome c5530 family protein.
      
 0.618
MCA0423
Cytochrome c5530; Identified by match to protein family HMM PF00801.
      
 0.618
MCA0445
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
MCA0446
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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