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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA3008Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00500; match to protein family HMM PF06634. (1012 aa)    
Predicted Functional Partners:
MCA3011
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00499.
 
     0.945
MCA3005
ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.
     0.917
MCA3006
Transcriptional regulator, AbrB family; Identified by match to protein family HMM TIGR01439.
       0.773
MCA3007
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00950.
       0.773
MCA2682
Prophage LambdaMc01, helicase, SNF2 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.
 
     0.771
MCA3010
Conserved hypothetical protein; Identified by similarity to GP:19916313; match to protein family HMM PF04326.
       0.762
MCA3009
PHP N-terminal domain protein; Identified by match to protein family HMM PF02231.
       0.757
MCA3012
Conserved domain protein; Identified by similarity to GP:5738269.
       0.757
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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