MCA3011 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCA3011

Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00499. (942 aa)

Predicted Functional Partners:

MCA3008

0.945

MCA3005

0.921

MCA3010

0.782

MCA2682

0.775

MCA3009

0.773

MCA3012

0.773

MCA3006

0.757

MCA3007

0.757

MCA2684

0.744

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MCA2682	MCA2684	Prophage LambdaMc01, helicase, SNF2 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.	Conserved domain protein; Identified by similarity to GP:19887865.	0.948
MCA2682	MCA3005	Prophage LambdaMc01, helicase, SNF2 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	0.533
MCA2682	MCA3008	Prophage LambdaMc01, helicase, SNF2 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00500; match to protein family HMM PF06634.	0.771
MCA2682	MCA3011	Prophage LambdaMc01, helicase, SNF2 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00499.	0.775
MCA2684	MCA2682	Conserved domain protein; Identified by similarity to GP:19887865.	Prophage LambdaMc01, helicase, SNF2 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.	0.948
MCA2684	MCA3005	Conserved domain protein; Identified by similarity to GP:19887865.	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	0.738
MCA2684	MCA3011	Conserved domain protein; Identified by similarity to GP:19887865.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00499.	0.744
MCA3005	MCA2682	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	Prophage LambdaMc01, helicase, SNF2 family; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851.	0.533
MCA3005	MCA2684	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	Conserved domain protein; Identified by similarity to GP:19887865.	0.738
MCA3005	MCA3006	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	Transcriptional regulator, AbrB family; Identified by match to protein family HMM TIGR01439.	0.634
MCA3005	MCA3007	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00950.	0.634
MCA3005	MCA3008	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00500; match to protein family HMM PF06634.	0.917
MCA3005	MCA3009	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	PHP N-terminal domain protein; Identified by match to protein family HMM PF02231.	0.634
MCA3005	MCA3010	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	Conserved hypothetical protein; Identified by similarity to GP:19916313; match to protein family HMM PF04326.	0.629
MCA3005	MCA3011	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00499.	0.921
MCA3005	MCA3012	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	Conserved domain protein; Identified by similarity to GP:5738269.	0.621
MCA3006	MCA3005	Transcriptional regulator, AbrB family; Identified by match to protein family HMM TIGR01439.	ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to OMNI:NTL01SM00503; match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	0.634
MCA3006	MCA3007	Transcriptional regulator, AbrB family; Identified by match to protein family HMM TIGR01439.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00950.	0.820
MCA3006	MCA3008	Transcriptional regulator, AbrB family; Identified by match to protein family HMM TIGR01439.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00500; match to protein family HMM PF06634.	0.773
MCA3006	MCA3009	Transcriptional regulator, AbrB family; Identified by match to protein family HMM TIGR01439.	PHP N-terminal domain protein; Identified by match to protein family HMM PF02231.	0.757

page 1 of 4

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About